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Plant Diversity and Resources

Journal of Systematics and Evolution

Volume 55 Issue 3, Pages 200C207.

Published Online: 7 Mar. 2017

DOI: 10.1111/jse.12242

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Identification and characterization of Rubisco activase genes in Oryza punctata

Si Xu1†, Zong-Yan Qin1, Pi-Chang Gong2, Qian-Li Dong3, and Ying Bao1†*

1School of Life Sciences, Qufu Normal University, Qufu 273165, Shandong, China

2State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China

3Key Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun 130024, China

These authors contributed equally to this work.

Keywords: Rubisco activase; alternative splicing; wild rice; expression divergence; protein interaction


Rubisco activase (Rca), a specific chaperone, catalyzes the in vivo activation of Rubisco, and thus plays a major role in plant photosynthesis. Although the genes encoding Rubisco activase have been studied in many model or economic plants, few studies have analyzed their homologs in plants of closely related crop species. In this study, an Rca gene was identified and characterized in a wild relative of rice, Oryza punctata Kotschy ex Steud. The gene was 2747 bp long and possessed six exons and five introns with 47% GC content. Furthermore, cDNA sequencing produced two transcripts, RcaL and RcaS, that differed in the sequence by an inclusion of 99 bp at the carboxy terminus of RcaL. Sequence comparison between the two transcripts and the genomic DNA showed that there was a 20-bp alternative splicing event that occurred at the fifth intron of the gene leading to the synthesis of a short polypeptide. The leaf transcriptome analysis showed that RcaS had a higher expression level than that of RcaL in a normal growth environment. In addition, the yeast two-hybrid assays showed the small isoform of Rubisco activase in close contact with the large subunit of the Rubisco in this species, supporting the side-on binding model of interaction between two proteins. This study broadens our understanding of the molecular characteristics of some essential genes in photosynthesis.


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