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Special Issue:Phylogenomic Approaches to Deciphering the Tree of Life   

September 2015, Volume 53 Issue 5, Pages 369每476.


Cover illustration:
The hierarchical model for multigene sequence data. The model consists of three components〞alignments, gene trees and the species tree. This hierarchical model involves two layers; the sequences-and-genetree layer and the genetree-and-speciestree layer. The model assumes that the gene trees are generated from a coalescent process occurring along the lineages of the species tree, while the sequences are generated from a mutation process occurring on the branches of the gene trees. See Liu et al., pp. 380每390 in this issue. The cover is designed by Alice Tangerini and Lauren Bassing based on Fig. 1 from Liu et al.


  Editoral
Phylogenomic approaches to deciphering the tree of life  
Jun Wen1, Jianquan Liu2,3, Song Ge4, Qiu-Yun (Jenny) Xiang5 and Elizabeth A. Zimmer1
Journal of Systematics and Evolution 2015 53(5): 369每370
Published Online: September 18, 2015
DOI: 10.1111/jse.12175
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF       
  Reviews
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next-gen approaches  
Elizabeth A. Zimmer* and Jun Wen*
Journal of Systematics and Evolution 2015 53(5): 371每379
Published Online: September 18, 2015
DOI: 10.1111/jse.12174
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF       
Coalescent methods for estimating species trees from phylogenomic data  
Liang Liu1,2*, Shaoyuan Wu3 and Lili Yu4
Journal of Systematics and Evolution 2015 53(5): 380每390
Published Online: June 19, 2015
DOI: 10.1111/jse.12160
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF       
  Research Articles
Using phylogenomics to resolve mega-families: An example from Compositae  
Jennifer R. Mandel1,2†*, Rebecca B. Dikow3† and Vicki A. Funk4
Journal of Systematics and Evolution 2015 53(5): 391每402
Published Online: August 4, 2015
DOI: 10.1111/jse.12167
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF   |   Supporting Information       
Phylotranscriptomic analyses in plants using Betulaceae as an example  
Hui Ma1, Jing Lu1, Bing-Bing Liu2, Bing-Bing Duan1, Xiao-Dong He1 and Jian-Quan Liu1,2*
Journal of Systematics and Evolution 2015 53(5): 403每410
Published Online: September 18, 2015
DOI: 10.1111/jse.12178
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF       
Microfluidic PCR-based target enrichment: A case study in two rapid radiations of Commiphora (Burseraceae) from Madagascar  
Morgan R. Gostel1*, Kiera A. Coy2 and Andrea Weeks3
Journal of Systematics and Evolution 2015 53(5): 411每431
Published Online: September 4, 2015
DOI: 10.1111/jse.12173
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF   |   Supporting Information       
Phylogenomics of polyploid Fothergilla (Hamamelidaceae) by RAD-tag based GBS〞insights into species origin and effects of software pipelines  
Zhe-Chen Qi1,4, Yi Yu1†, Xiang Liu1, Andrew Pais1, Thomas Ranney2*, Ross Whetten3* and Qiu-Yun (Jenny) Xiang1*
Journal of Systematics and Evolution 2015 53(5): 432每447
Published Online: September 9, 2015
DOI: 10.1111/jse.12176
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF   |   Supporting Information       
Chloroplast phylogenomics resolves key relationships in ferns  
Jin-Mei Lu1†, Ning Zhang2†, Xin-Yu Du1, Jun Wen2* and De-Zhu Li1*
Journal of Systematics and Evolution 2015 53(5): 448每457
Published Online: September 18, 2015
DOI: 10.1111/jse.12180
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF   |   Supporting Information       
Plastid genome sequences of legumes reveal parallel inversions and multiple losses of rps16 in papilionoids  
Erika N. Schwarz1*, Tracey A. Ruhlman1, Jamal S. M. Sabir2, Nahid H. Hajrah2, Njud S. Alharbi2, Abdulrahman L. Al-Malki3, C. Donovan Bailey4 and Robert K. Jansen1,2
Journal of Systematics and Evolution 2015 53(5): 458每468
Published Online: September 18, 2015
DOI: 10.1111/jse.12179
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF   |   Supporting Information       
Expression patterns of AP1, FUL, FT and LEAFY orthologs in Vitaceae support the homology of tendrils and inflorescences throughout the grape family  
Ning Zhang, Jun Wen and Elizabeth A. Zimmer*
Journal of Systematics and Evolution 2015 53(5): 469每476
Published Online: January 12, 2015
DOI: 10.1111/jse.12138
      Abstract    |   References   |   Full Text HTML   |   Full Text PDF       

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