Journal of Systematics and Evolution

• •    下一篇

  

  • 收稿日期:2025-03-26 接受日期:2025-08-10

Genome-based polyphasic taxonomy of desert-derived Kineococcus reveals nine novel species with plant growth-promoting traits

Jie Huang1†, Shuai Li2†, Zhuo-Huan Zheng1, Jun Liu1, Yi-Jun Mo1, Ting-Ting She3, Li-Jia Huang3, Wen-Sheng Shu4,6*, Lei Dong1,5*, Wen-Jun Li1,2,5*   

  1. 1 State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology, School of Life Sciences, Sun Yat‑sen University, Guangzhou 510275, China
    2 State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
    3 Guangdong University of Education, Guangzhou 510275, China
    4 Guangdong MAGIGENE Biotechnology Co., Ltd., Shenzhen 518055, China
    5 Xizang Key Laboratory of Plateau Fungi, Institute of Plateau Biology of Xizang Autonomous Region, Lhasa 850000, China
    6 Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou 510631, China

    The authors contributed equally to this work.
    *Authors for correspondence. Wen-Jun Li. E–mail: liwenjun3@mail.sysu.edu.cn; Lei Dong. donglei6@mail.sysu.edu.cn; Wen-Sheng Shu. E–mail: shuwensheng@magigene.com

  • Received:2025-03-26 Accepted:2025-08-10
  • Supported by:
    This work was supported by the National Natural Science Foundation of China (32400004, 32270076), Shenzhen Science and Technology Program (KQTD20190929172839621), the Science and Technology Major Project of Xizang (XZ2025), Guizhou Science and Technology Support Program (2022021), the Third Xinjiang Scientific Expedition Program (2022xjkk1200), the Open Project of Guangdong Provincial Key Laboratory of Plant Stress Biology (2024PlantKF02), Guangdong S&T program (2022B0202110001) and the Guangdong Basic and Applied Basic Research Foundation (2023A1515012020).

Abstract: The genus Kineococcus is primarily found in extreme environments and plant-associated habitats, suggesting its potential for stress tolerance and plant growth promotion. However, the diversity and functional potential of this genus remain largely unexplored, mainly due to the limited availability of strains and genomic resources. In this study, 33 Kineococcus strains were isolated from the Gurbantunggut Desert and Shanshan Kumtag Desert in Xinjiang, China. Based on the overall genome relatedness indices (OGRI) and sampling origins, 12 representative Kineococcus strains were selected for polyphasic taxonomy and assessment of plant growth promoting traits. By integrating phylogenetic, morphological, physiological, chemotaxonomic, and genomic analyses, these strains were classified into nine novel species (one with two subspecies). The representative isolates exhibited various key plant growth-promoting traits, including siderophore production, cellulose degradation, organophosphate solubilization, and indole-3-acetic acid (IAA) production. This study significantly expands the strains, species, and genome resources of the genus Kineococcus, providing valuable insights into its ecological adaptation, particularly in saline-alkali tolerance, and growth-promoting potential for sustainable agriculture.

Key words: desert, Kineococcus, novel species, plant growth-promoting, polyphasic taxonomy, saline-alkali-tolerant