J Syst Evol

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Out of Africa: Phylogenomics and biogeography of Tribe Euphorbieae (Euphorbiaceae)

Abiton O. Atolwa1,2,3†, Zhaohui Ran1,2†, Hager R. Belal1,2, Elijah M. Mkala1,2,3, Veronicah M. Ngumbau3, Elijah Nyakudya4, Shengwei Wang1,5, Neng Wei1,5*, Qingfeng Wang1,5   

  1. 1State Key Laboratory of Plant Diversity and Speciality Crops, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
    2University of Chinese Academy of Sciences, Beijing 100049, China
    3East African Herbarium, National Museums of Kenya, Nairobi, P.O. Box 45166-00100, Kenya
    4Faculty of Agriculture, Environment and Food Systems, University of Zimbabwe, Harare, P.O. Box MP167, Zimbabwe
    5Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan 430074, China
    These authors contributed equally to this work.
    *Author for correspondence. E-mail: weineng@wbgcas.cn
  • Received:2025-09-04 Accepted:2026-01-22
  • Supported by:
    This work is supported by the National Natural Science Foundation of China (32200174; 32470225; W2412129); Sino-Africa Joint Research Center, Chinese Academy of Sciences (SAJC202527ZD01); National Key Research and Development Program of China (2024YFE0214500), as well as Support Program to Plant Taxonomist from Chinese Academy of Sciences for Euphorbiaceae (CAS-TAX-24-040).

Abstract: The tribe Euphorbieae, the most species-rich lineage within the Euphorbiaceae family, comprises five genera across three subtribes (Anthosteminae, Neoguillauminiinae, and Euphorbiinae), with over 2000 species, predominantly in Euphorbia. While ecologically significant globally, critical gaps persist in resolving species-level phylogeny of Euphorbieae and elucidating the biogeographic drivers of its global distribution. Among the total 34 sampled species in Euphoroideae, 28 species were applied to represent all five genera in three subtribes of Euphorbieae, including ten newly sequenced species for all 11 extant species of Anthosteminae and Neoguillauminiinae, plus 18 representative Euphorbia (Euphorbiinae) species. Using plastome and nuclear ribosomal DNA (nrDNA) datasets, we reconstructed phylogenetic relationships, estimated divergence time, inferred ancestral areas, and analyzed diversification patterns. Our results strongly support Euphorbieae's monophyly and clarify sister relationships among subtribes. We present the first resolved species-level phylogeny for Euphorbieae (excluding the gigantic genus Euphorbia), revealing the tribe's evolutionary timeline, with instances of nuclear-plastid discordance suggestive of hybridization or incomplete lineage sorting. The crown age of Euphorbieae dates to approximately 62.11 million years ago (Ma) in the early Paleocene. Biogeographic analyses reveal the African origin at early Paleocene, followed by major dispersal events to Australasia, Asia, and the Neotropics. The combined plastome-nrDNA approach significantly enhanced phylogenetic resolution. These findings provide crucial insights into Euphorbieae's global 'out of Africa' distribution pattern, and contribute to understanding the role of key innovations and climatic shifts in plant diversification.

Key words: African origin, biogeography, divergence time estimation, Euphorbieae, Phylogenomics