J Syst Evol

• Research Article •     Next Articles

Chromosome-scale assembly of Salix integra reveals a conserved sex-determination mechanism in 15ZW clade I willows

Xin-Yu Liu1,2, Zhi-Xiang Zhang1, Ya-Jing Cheng3*, Zhi-Qing Xue2*, Li He2*   

  1. 1 Laboratory of Systematic Evolution and Biogeography of Woody Plants, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100091, China;
    2 Key Laboratory of East China Plant Conservation and Utilization, National Forestry and Grassland Administration, Shanghai Chenshan Botanical Garden, Shanghai, 201602, China;
    3 China National Botanical Garden (North Garden), Beijing 100093, China;

    *Authors for correspondence. Ya-Jing Cheng. Email:Chengyj728@163.com; Zhi-Qing Xue. Email:953674238@qq.com; Li He. Email:lhe@cemps.ac.cn
  • Received:2025-12-03 Accepted:2026-04-02
  • Supported by:
    This work was supported by the National Natural Science Foundation of China (grant no. 32500303 to Z.-Q. X., and 32171813 to L.H.) and Special Fund for Scientific Research of Shanghai Landscaping & City Appearance Administrative Bureau (grant nos. G232403, G242417, G252403 to L.H. & G252411 to Z.-Q. X.)

Abstract: Sex chromosomes frequently undergo turnover through the recruitment of new sex-determining genes or translocation of ancestral genes. This phenomenon is particularly evident in Salix (Salicaceae). In Populus, the sister genus of Salix, a partial-ARR17-based sex-determination mechanism has been reported, and is also found in several Salix species. In Vetrix 15ZW clade I of Salix, species share a female heterogamety system on chromosome 15. A partial-PI (PISTILLATA)-based mechanism has been proposed for several species in this clade, exceptS. purpurea, which appears to employ a two-gene model involving ARR17 and GATA15. To further investigate the evolution of sex-determining factors in this clade, we assembled a high-quality, haplotype-resolved genome of S. integra, a close relative ofS. purpurea. Based on resequencing data from males and females, we identified W- and Z-linked regions located in pericentromeric regions on chromosome 15, consistent with those reported in other Salix species. Comparative analyses showed that S. integra possesses a partial-PI-based mechanism, supporting the hypothesis that PI sequences were recruited in the ancestor of 15ZW clade I, whereas the ancestor ofS. purpurea recruited a two-gene model later. Together, these results advance our understanding of the relationship between sex-determining plasticity and sex chromosome evolution in plants.

Key words: ARR17, dioecy, PISTILLATA, Salix integra, sex determination