J Syst Evol

• Research Article •     Next Articles

Genomic signatures associated with convergent funnel-web building behavior in spiders

Zheng Fan1†, Lu-Yu Wang1†, Zhi Li2†, Tian-Yu Ren1, Bing Tan1, Wei Pu1, Wen-Hui Wu1, Jun-Han Xiong1, Ling-Xin Cheng1, Jin-Xia Kong1, Bin Luo1, Zi-Zhong Yang2*, Chao Tong3*, Zhi-Sheng Zhang1*   

  1. 1 Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), School of Life Sciences, Southwest University, Chongqing 400715, China;
    2 Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, College of Pharmacy, Dali University, Dali 671000 China;
    3 School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA
    These authors contributed equally to this work.
    *Authors for correspondence.Zi-Zhong Yang. Email: yangzizhong@Dali.edu.cn; Chao Tong. Email: tongchao1990@gmail.com; Zhi-Sheng Zhang. Email: zhangzs327@qq.com
  • Received:2026-05-28 Accepted:2026-06-25
  • Supported by:
    This work was supported in part by the High Performance Computing (HPC) clusters at Southwest University. This research is supported by the National Natural Science Foundation of China (32570539), the Key Project of Chongqing Municipality (cstc2019jcyj-zdxmX0006), the Science & Technology Fundamental Resources Investigation Program (2024FY100403), and the Fund on survey of Invertebrates from Yintiaoling Nature Reserve (CQS24C00333) by Zhi-Sheng Zhang; and the National Natural Science Foundation of China (32160113), and the Special Program of Science and Technology of Yunnan Province (202002AA100007), the Key Project of Basic Research Plan of Yunnan Province (202401AS070027) by Zi-Zhong Yang.

Abstract: Spiders exhibit diverse and intricate web-building behaviors, which represent a classic model for studying the evolution of complex traits. Funnel-web architectures occur in several distantly related spider lineages, including Agelenidae and Macrothelidae, suggesting possible convergent evolution of funnel-web-associated traits. This repeated emergence of a complex behavior offers an example of this funnel-web building behavioral convergence. Here, we generated a chromosome-level genome assembly for the agelenid spider Tamgrinia laticeps. Using comparative genomic analyses across 15 spider species with diverse web types, we identified genomic patterns potentially associated with funnel-web-associated behaviors. Numerous genes exhibited convergent shifts in selective pressure, signals of positive selection, or convergent amino acid substitutions. These candidate genes were enriched in functions related to synaptic transmission (e.g., Gabbr1, Crtc1), neural development and neuroregulation (e.g., Rfx2, E(z)), and sensory-motor control (e.g., PKD2, ADORA2A). In addition, convergent amino acid substitutions were detected in several neural and motor-related genes (e.g., VAChT, ine), which exhibited shared substitutions across all three funnel-web building species. This study provides new insights into the genomic basis of behavioral convergence in spiders.

Key words: Genome, Funnel-web, Comparative genomic, Agelenidae, Macrothelidae, Spider