A new phylogenetic tribal classification of the grape family (Vitaceae)

doi:10.1111/jse.12427

J Syst Evol ›› 2018, Vol. 56 ›› Issue (4): 262-272.DOI: 10.1111/jse.12427

• Review • Previous Articles Next Articles

A new phylogenetic tribal classification of the grape family (Vitaceae)

Jun Wen^1*, Li-Min Lu², Ze-Long Nie³, Xiu-Qun Liu⁴, Ning Zhang⁵, Stefanie Ickert-Bond⁶, Jean Gerrath^7,8, Steven R. Manchester⁹, John Boggan¹, and Zhiduan Chen²

¹Department of Botany, National Museum of Natural History, MRC 166, Smithsonian Institution, Washington DC, 20013-7012, USA
²State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
³Key Laboratory of Plant Resources Conservation and Utilization, College of Biology and Environmental Sciences, Jishou University, Jishou 416000, Hunan, China
⁴Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan 430070, China
⁵Center for Food Safety and Applied Nutrition, Office of Regulatory Science, U. S. Food and Drug Administration, College Park, MD 20740-3835, USA
⁶UA Museum of the North Herbarium and Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, AK 99775-6960, USA
⁷Department of Biology, University of Northern Iowa, Cedar Falls, IA 50614-0421, USA
⁸Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada
⁹Florida Museum of Natural History and Department of Biology, University of Florida, Gainesville, Florida 32611-7800, USA

Received:2017-11-03 Accepted:2018-05-17 Published:2018-07-10

Abstract

Abstract:

Vitaceae (the grape family) consist of 16 genera and ca. 950 species primarily distributed in tropical regions. The family is well‐known for the economic importance of grapes, and is also ecologically significant with many species as dominant climbers in tropical and temperate forests. Recent phylogenetic and phylogenomic analyses of sequence data from all three genomes have supported five major clades within Vitaceae: (i) the clade of Ampelopsis, Nekemias, Rhoicissus, and Clematicissus; (ii) the Cissus clade; (iii) the clade of Cayratia, Causonis, Cyphostemma, Pseudocayratia, Tetrastigma, and an undescribed genus “Afrocayratia”; (iv) the clade of Parthenocissus and Yua; and (v) the grape genus Vitis and its close tropical relatives Ampelocissus, Pterisanthes and Nothocissus, with Nothocissus and Pterisanthes nested within Ampelocissus. Based on the phylogenetic and morphological (mostly inflorescence, floral and seed characters) evidence, the new classification places the 950 species and 16 genera into five tribes: (i) tribe Ampelopsideae J.Wen & Z.L.Nie, trib. nov. (47 species in four genera; Ampelopsis, Nekemias, Rhoicissus and Clematicissus); (ii) tribe Cisseae Rchb. (300 species in one genus; Cissus); (iii) tribe Cayratieae J.Wen & L.M.Lu, trib. nov. (370 species in seven genera; Cayratia, Causonis, “Afrocayratia”, Pseudocayratia, Acareosperma, Cyphostemma and Tetrastigma); (iv) tribe Parthenocisseae J.Wen & Z.D.Chen, trib. nov. (ca. 16 spp. in two genera; Parthenocissus and Yua); and (v) tribe Viteae Dumort. (ca. 190 species in two genera; Ampelocissus and Vitis).

Key words: Ampelopseae, Cayratieae, Cisseae, classification, grape family, molecular phylogenetics, Parthenocisseae, tribal classification, Vitaceae, Viteae.

Jun Wen, Li-Min Lu, Ze-Long Nie, Xiu-Qun Liu, Ning Zhang, Stefanie Ickert-Bond, Jean Gerrath, Steven R. Manchester, John Boggan, Zhi-Duan Chen. A new phylogenetic tribal classification of the grape family (Vitaceae)[J]. J Syst Evol, 2018, 56(4): 262-272.

[1]	Katya J. Romero-Soler, Ivón M. Ramírez-Morillo, Eduardo Ruiz-Sanchez, Claudia T. Hornung-Leoni, Germán Carnevali, and Néstor Raigoza. Phylogenetic relationships within the Mexican genus Bakerantha (Hechtioideae, Bromeliaceae) based on plastid and nuclear DNA: Implications for taxonomy [J]. J Syst Evol, 2022, 60(1): 55-72.
[2]	Rong Liu, Yu-Ning Huang, Tao Yang, Jin-Guo Hu, Hong-Yan Zhang, Yi-Shan Ji, Dong Wang, Guan Li, Chen-Yu Wang, Meng-Wei Li, Xin Yan, and Xu-Xiao Zong. Population genetic structure and classification of cultivated and wild pea (Pisum sp.) based on morphological traits and SSR markers [J]. J Syst Evol, 2022, 60(1): 85-100.
[3]	Bin-Bin Liu, Zhi-Yao Ma, Chen Ren, Richard G. J. Hodel, Miao Sun, Xiu-Qun Liu, Guang-Ning Liu, De-Yuan Hong, Elizabeth A. Zimmer, and Jun Wen. Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae [J]. J Syst Evol, 2021, 59(5): 1124-1138.
[4]	Peter C. van Welzen, Susana Arias Guerrero, Deby Arifiani, Tjut J.F. Bangun, Roderick W. Bouman, Marcel C.M. Eurlings, Iska Gushilman, Peter B. Phillipson, Iris Tabak, Esmée Winkel, and Kenneth J. Wurdack. Weda, a new genus with two new species of Euphorbiaceae-Crotonoideae from Halmahera (North Maluku, Indonesia) and phylogenetic relationships of the Australasian tribe Ricinocarpeae [J]. J Syst Evol, 2021, 59(5): 1000-1017.
[5]	Julian R. Starr, Pedro Jiménez-Mejías, Alexandre R. Zuntini, Étienne Léveillé-Bourret, Ilias Semmouri, Muthama Muasya, William J. Baker, Grace E. Brewer, Niroshini Epitawalage, Isabel Fairlie, Félix Forest, Izai A. B. Sabino Kikuchi, Lisa Pokorny, and Isabel Larridon. Targeted sequencing supports morphology and embryo features in resolving the classification of Cyperaceae tribe Fuireneae s.l. [J]. J Syst Evol, 2021, 59(4): 809-832.
[6]	Global Carex Group, Eric H. Roalson, Pedro Jiménez-Mejías, Andrew L. Hipp, Carmen Benítez-Benítez, Leo P. Bruederle, Kyong-Sook Chung, Marcial Escudero, Bruce A. Ford, Kerry Ford, Sebastian Gebauer, Berit Gehrke, Marlene Hahn, Muhammad Qasim Hayat, Mathias H. Hoffmann, Xiao-Feng Jin, Sangtae Kim, Isabel Larridon, Étienne Léveillé-Bourret, Yi- Fei Lu, Modesto Luceño, Enrique Maguilla, Jose Ignacio Márquez-Corro, Santiago Martín-Bravo, Tomomi Masaki, Mónica Míguez, Robert F. C. Naczi, Anton A. Reznicek, Daniel Spalink, Julian R. Starr, Uzma, Tamara Villaverde, Marcia J. Waterway, Karen L. Wilson, and Shu-Ren Zhang. A framework infrageneric classification of Carex (Cyperaceae) and its organizing principles [J]. J Syst Evol, 2021, 59(4): 726-762.
[7]	Étienne Léveillé-Bourret, Quinn Eggertson, Sarah Hambleton, and Julian R. Starr. Cryptic diversity and significant cophylogenetic signal detected by DNA barcoding the rust fungi (Pucciniaceae) of Cyperaceae–Juncaceae [J]. J Syst Evol, 2021, 59(4): 833-851.
[8]	Isabel Larridon, Alexandre R. Zuntini, Étienne Léveillé-Bourret, Russell L. Barrett, Julian R. Starr, A. Muthama Muasya, Tamara Villaverde, Kenneth Bauters, Grace E. Brewer, Jeremy J. Bruhl, Suzana M. Costa, Tammy L. Elliott, Niroshini Epitawalage, Marcial Escudero, Isabel Fairlie, Paul Goetghebeur, Andrew L. Hipp, Pedro Jiménez-Mejías, Izai A.B. Sabino Kikuchi, Modesto Luceño, José Ignacio Márquez-Corro, Santiago Martín-Bravo, Olivier Maurin, Lisa Pokorny, Eric H. Roalson, Ilias Semmouri, David A. Simpson, Daniel Spalink, W. Wayt Thomas, Karen L. Wilson, Martin Xanthos, Félix Forest, and William J. Baker. A new classification of Cyperaceae (Poales) supported by phylogenomic data [J]. J Syst Evol, 2021, 59(4): 852-895.
[9]	Wei Han and Yu Jia. Phylogeny and classification of the Sematophyllaceae s.l. (Hypnales, Bryophyta) [J]. J Syst Evol, 2021, 59(3): 524-540.
[10]	Romer Narindra Rabarijaona, Viet-Cuong Dang, Gaurav Parmar, Bing Liu, Jun Wen, Zhi-Duan Chen, and Li-Min Lu. Phylogeny and taxonomy of Afrocayratia, a new genus of Vitaceae from continental Africa and Madagascar [J]. J Syst Evol, 2020, 58(6): 1090-1107.
[11]	Yu-Bing Wang, Bin-Bin Liu, Ze-Long Nie, Hong-Feng Chen, Fa-Ju Chen, Richard B. Figlar, and Jun Wen. Major clades and a revised classification of Magnolia and Magnoliaceae based on whole plastid genome sequences via genome skimming [J]. J Syst Evol, 2020, 58(5): 673-695.
[12]	Elena Carrió, Meike Engelbrecht, Patricio García-Fayos, and Jaime Güemes. Phylogeny, biogeography, and morphological ancestral character reconstruction in the Mediterranean genus Fumana (Cistaceae) [J]. J Syst Evol, 2020, 58(3): 201-220.
[13]	Bing Liu, Yun-Hong Tan, Su Liu, Richard G. Olmstead, Dao-Zhang Min, Zhi-Duan Chen, Nirmal Joshee, Brajesh N. Vaidya, Richard C. K. Chung, and Bo Li. Phylogenetic relationships of Cyrtandromoea and Wightia revisited: A new tribe in Phrymaceae and a new family in Lamiales [J]. J Syst Evol, 2020, 58(1): 1-17.
[14]	Zhao-Fu Chu, Jun Wen, Yong-Ping Yang, Ze-Long Nie, Ying Meng. Genome size variation and evolution in the grape family Vitaceae [J]. J Syst Evol, 2018, 56(4): 273-282.
[15]	Stefanie M. Ickert-Bond, AJ Harris, Sue Lutz, Jun Wen. A detailed study of leaf micromorphology and anatomy of New World Vitis L. subgenus Vitis within a phylogenetic and ecological framework reveals evolutionary convergence [J]. J Syst Evol, 2018, 56(4): 309-330.

A new phylogenetic tribal classification of the grape family (Vitaceae)

HTML

PDF

Knowledge

Cited

Abstract

Cite this article

share this article

References

Related Articles 15

Recommended Articles

Metrics

Comments